Epidermal growth factor receptor

Site	Peptide	Modification	Experiment
K37	VCQGTSNkLTQLGTF	Sumoylation	PhosphositePlus November 2016
N56	LSLQRMFnNCEVVLG	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
N73	EITYVQRnYDLSFLK	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD
S77	VQRNYDLsFLKTIQE	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015
R98	IALNTVErIPLENLQ	None	All human mutations dbSNP All mutations
Y112	QIIRGNMyYENSYAL	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y113	IIRGNMYyENSYALA	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y117	NMYYENSyALAVLSN	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
N128	VLSNYDAnKTGLKEL	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
K133	DANKTGLkELPMRNL	N6-acetyllysine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 acK test PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
S151	LHGAVRFsNNPALCN	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
N175	VSSDFLSnMSMDFQN	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
C190	HLGSCQKcDPSCPNG	S-nitrosocysteine	dbPTM 3.0 experimentally verified PTM sites
N196	KCDPSCPnGSCWGAG	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
R222	CAQQCSGrCRGKSPS	Dimethylation	PhosphositePlus November 2016
R224	QQCSGRCrGKSPSDC	Dimethylation	PhosphositePlus November 2016
S229	RCRGKSPsDCCHNQC	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN
P266	TCKDTCPpLMLYNPT	None	All human mutations dbSNP All mutations
Y270	TCPPLMLyNPTTYQM	Phosphotyrosine	Phosphosite, September 2009 B Phosphosite, September 2009 Phosphosite, September 2009 March 24
K284	MDVNPEGkYSFGATC	N6-acetyllysine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 acK test PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
T290	GKYSFGAtCVKKCPR	Phosphothreonine	dbPTM 3.0 experimentally verified PTM sites PhosphositePlus November 2016 HPRD: Human Protein Reference Database Curated Modifications
C291	KYSFGATcVKKCPRN	S-nitrosocysteine	dbPTM 3.0 experimentally verified PTM sites
C311	HGSCVRAcGADSYEM	S-nitrosocysteine	dbPTM 3.0 experimentally verified PTM sites
Y316	RACGADSyEMEEDGV	Phosphotyrosine	Phosphosite, September 2009 B Phosphosite, September 2009 Phosphosite, September 2009 March 24
C329	GVRKCKKcEGPCRKV	S-nitrosocysteine	dbPTM 3.0 experimentally verified PTM sites
K346	GIGIGEFkDSLSINA	N6-acetyllysine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 acK test PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
N352	FKDSLSInATNIKHF	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
T354	DSLSINAtNIKHFKN	Phosphothreonine	PhosphoSitePlus Datasets Combined June 2016 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels
N361	TNIKHFKnCTSISGD	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
N413	LIQAWPEnRTDLHAF	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
N444	SLAVVSLnITSLGLR	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
S457	LRSLKEIsDGDVIIS	Phosphoserine	PhosphoSitePlus Datasets Combined June 2016 PhosphositePlus November 2016
C470	ISGNKNLcYANTINW	S-nitrosocysteine	dbPTM 3.0 experimentally verified PTM sites
S511	QVCHALCsPEGCWGP	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
R521	GCWGPEPrDCVSCRN	None	All human mutations dbSNP All mutations
N528	RDCVSCRnVSRGREC	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
N568	ECLPQAMnITCTGRG	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
Y585	NCIQCAHyIDGPHCV	Phosphotyrosine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
N603	PAGVMGEnNTLVWKY	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
N623	VCHLCHPnCTYGCTG	N-Glycosylation	UniProtKB CARBOHYD dbPTM 3.0 experimentally verified PTM sites UniProtKB CARBOHYD HPRD: Human Protein Reference Database Curated Modifications
S645	TNGPKIPsIATGMVG	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
T648	PKIPSIAtGMVGALL	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
V674	FMRRRHIvRKRTLRR	None	All human mutations dbSNP All mutations
T678	RHIVRKRtLRRLLQE	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Phosphosite, September 2009 March 24
T693	RELVEPLtPSGEAPN	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES TCGA PNNL: Ovarian phosphoproteomic data DLDsti Phosphosite Plus Datasets Combined July 3, 2013 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Phosphosite, September 2009 B [Only sites that respond to ischemia] Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation Flpin_EGFR Phosphosite, September 2009 March 24
S695	LVEPLTPsGEAPNQA	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Phosphosite, September 2009 March 24
K708	QALLRILkETEFKKI	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
E709	ALLRILKeTEFKKIK	None	All human mutations dbSNP All mutations
K713	ILKETEFkKIKVLGS	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K714	LKETEFKkIKVLGSG	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K716	ETEFKKIkVLGSGAF	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
G719	FKKIKVLgSGAFGTV	None	dbSNP All mutations All human mutations Pathogenic SNPs dbSNP pathogenic, from dev server Pathogenic mutations Test Set 3
S720	KKIKVLGsGAFGTVY	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
G724	VLGSGAFgTVYKGLW	None	All human mutations dbSNP All mutations
T725	LGSGAFGtVYKGLWI	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 March 24 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 UniProtKB - MOD_RES PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
Y727	SGAFGTVyKGLWIPE	Phosphotyrosine	Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases HPRD: Human Protein Reference Database Curated Modifications PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 March 24 Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified PhosphoSite, May 2007 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer
Y727	SGAFGTVyKGLWIPE	None	Tinti All Peptides
K728	GAFGTVYkGLWIPEG	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K728	GAFGTVYkGLWIPEG	None	Bruce Lab interactions with lower case Bruce Lab interactions - sites Bruce lab interactions retry with sites
E734	YKGLWIPeGEKVKIP	None	All human mutations dbSNP All mutations
K737	LWIPEGEkVKIPVAI	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K739	IPEGEKVkIPVAIKE	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K739	IPEGEKVkIPVAIKE	None	Bruce Lab interactions with lower case Bruce Lab interactions - sites Bruce lab interactions retry with sites
L747	IPVAIKElREATSPK	None	All human mutations dbSNP All mutations
R748	PVAIKELrEATSPKA	None	All human mutations dbSNP All mutations
S752	KELREATsPKANKEI	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 Phosphosite, September 2009 March 24
K754	LREATSPkANKEILD	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K757	ATSPKANkEILDEAY	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y764	KEILDEAyVMASVDN	Phosphotyrosine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSite, May 2007 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 Phosphosite, September 2009 March 24
S768	DEAYVMAsVDNPHVC	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Phosphosite, September 2009 March 24 PhosphoSite, May 2007 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
S768	DEAYVMAsVDNPHVC	None	dbSNP All mutations All human mutations Pathogenic SNPs dbSNP pathogenic, from dev server Pathogenic mutations Test Set 3
V769	EAYVMASvDNPHVCR	None	All human mutations dbSNP All mutations
Q787	ICLTSTVqLITQLMP	None	All human mutations dbSNP All mutations
T790	TSTVQLItQLMPFGC	None	All human mutations dbSNP All mutations
Y801	PFGCLLDyVREHKDN	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K823	NWCVQIAkGMNYLED	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y827	QIAKGMNyLEDRRLV	Phosphotyrosine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
L833	NYLEDRRlVHRDLAA	None	All human mutations dbSNP All mutations
V834	YLEDRRLvHRDLAAR	None	All human mutations dbSNP All mutations
H835	LEDRRLVhRDLAARN	None	All human mutations dbSNP All mutations
L838	RRLVHRDlAARNVLV	None	All human mutations dbSNP All mutations
K846	AARNVLVkTPQHVKI	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
L858	VKITDFGlAKLLGAE	None	All human mutations dbSNP All mutations
K860	ITDFGLAkLLGAEEK	Ubiquitination	A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
L861	TDFGLAKlLGAEEKE	None	All human mutations dbSNP All mutations
K867	KLLGAEEkEYHAEGG	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y869	LGAEEKEyHAEGGKV	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications Wolf-Yadlin Phospho.ELM v9.0 dbPTM 3.0 experimentally verified PTM sites [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined July 3, 2013 test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y869	LGAEEKEyHAEGGKV	None	Tinti All Peptides
G873	EKEYHAEgGKVPIKW	None	All human mutations dbSNP All mutations
K875	EYHAEGGkVPIKWMA	Ubiquitination	PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 PhosphositePlus November 2016
Y891	ESILHRIyTHQSDVW	Phosphotyrosine	PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 HPRD: Human Protein Reference Database Curated Modifications
T892	SILHRIYtHQSDVWS	Phosphothreonine	PhosphoSitePlus Datasets Combined June 2016 PhosphositePlus November 2016
K913	ELMTFGSkPYDGIPA	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y915	MTFGSKPyDGIPASE	Phosphotyrosine	dbPTM 3.0 experimentally verified PTM sites HPRD: Human Protein Reference Database Curated Modifications Phospho.ELM v9.0
K929	EISSILEkGERLPQP	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
T940	LPQPPICtIDVYMIM	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y944	PICTIDVyMIMVKCW	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Phosphosite, September 2009 March 24 PhosphoSite, May 2007 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
K960	IDADSRPkFRELIIE	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
R962	ADSRPKFrELIIEFS	None	All human mutations dbSNP All mutations
K970	ELIIEFSkMARDPQR	Ubiquitination	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y978	MARDPQRyLVIQGDE	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 UniProtKB - MOD_RES Phosphosite, September 2009 March 24 PhosphoSite, May 2007 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
Y978	MARDPQRyLVIQGDE	None	Tinti All Peptides
H988	IQGDERMhLPSPTDS	None	All human mutations dbSNP All mutations
S991	DERMHLPsPTDSNFY	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications Wolf-Yadlin UniProtKB - MOD_RES [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 [Miscleavages removed] [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES TCGA PNNL: Ovarian phosphoproteomic data DLDsti Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Default Assignments Test] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
T993	RMHLPSPtDSNFYRA	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 UniProtKB - MOD_RES Phosphosite, September 2009 March 24 Proteogenomics connects somatic mutations to signalling in breast cancer Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
S995	HLPSPTDsNFYRALM	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y998	SPTDSNFyRALMDEE	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications Wolf-Yadlin UniProtKB - MOD_RES [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 [Miscleavages removed] [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Default Assignments Test] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y1016	DVVDADEyLIPQQGF	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Phosphosite, September 2009 March 24
Y1016	DVVDADEyLIPQQGF	None	Tinti All Peptides
S1025	IPQQGFFsSPSTSRT	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 UniProtKB - MOD_RES Phosphosite, September 2009 March 24 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
S1026	PQQGFFSsPSTSRTP	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Phosphosite, September 2009 March 24
S1028	QGFFSSPsTSRTPLL	Phosphoserine	Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites Phosphosite, September 2009 March 24 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder HPRD: Human Protein Reference Database Curated Modifications
S1030	FFSSPSTsRTPLLSS	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
T1032	SSPSTSRtPLLSSLS	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015
L1034	PSTSRTPlLSSLSAT	None	All human mutations dbSNP All mutations
S1036	TSRTPLLsSLSATSN	Phosphoserine	HPRD: Human Protein Reference Database Curated Modifications Phosphosite, September 2009 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites Phosphosite, September 2009 March 24
S1037	SRTPLLSsLSATSNN	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 UniProtKB - MOD_RES Phosphosite, September 2009 March 24 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
S1039	TPLLSSLsATSNNST	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 UniProtKB - MOD_RES HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Phosphosite, September 2009 March 24
T1041	LLSSLSAtSNNSTVA	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 UniProtKB - MOD_RES HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Phosphosite, September 2009 March 24
S1042	LSSLSATsNNSTVAC	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 UniProtKB - MOD_RES HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Phosphosite, September 2009 March 24
S1045	LSATSNNsTVACIDR	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 UniProtKB - MOD_RES Phosphosite, September 2009 March 24 Proteogenomics connects somatic mutations to signalling in breast cancer PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
T1046	SATSNNStVACIDRN	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
S1057	IDRNGLQsCPIKEDS	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 TCGA PNNL: Ovarian phosphoproteomic data PhosphoSitePlus Datasets Combined June 2016 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K1061	GLQSCPIkEDSFLQR	Ubiquitination	PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 PhosphositePlus November 2016
K1061	GLQSCPIkEDSFLQR	N6-acetyllysine	acK test PhosphositePlus November 2016
S1064	SCPIKEDsFLQRYSS	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 UniProtKB - MOD_RES HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES TCGA PNNL: Ovarian phosphoproteomic data Phosphosite Plus Datasets Combined July 3, 2013 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Phosphosite, September 2009 March 24
Y1069	EDSFLQRySSDPTGA	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications Wolf-Yadlin UniProtKB - MOD_RES Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules [Default Assignments] Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES [Default Assignments] Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules Phosphosite, September 2009 Phospho.ELM v9.0 [Miscleavages removed] [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks dbPTM 3.0 experimentally verified PTM sites UniProtKB - MOD_RES [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Default Assignments Test] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y1069	EDSFLQRySSDPTGA	None	Tinti All Peptides
S1070	DSFLQRYsSDPTGAL	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 Wolf-Yadlin HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
S1071	SFLQRYSsDPTGALT	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Phosphosite, September 2009 March 24
T1074	QRYSSDPtGALTEDS	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 Phosphosite, September 2009 March 24
T1078	SDPTGALtEDSIDDT	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Phosphosite, September 2009 March 24 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 HPRD: Human Protein Reference Database Curated Modifications
S1081	TGALTEDsIDDTFLP	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Phosphosite, September 2009 B PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Phosphosite, September 2009 March 24
T1085	TEDSIDDtFLPVPEY	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Phosphosite, September 2009 March 24 Proteogenomics connects somatic mutations to signalling in breast cancer PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
Y1092	TFLPVPEyINQSVPK	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications Wolf-Yadlin UniProtKB - MOD_RES Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules [Default Assignments] Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases [pY only] Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES Effects of HER2 overexpression on cell signaling networks governing proliferation and migration [Default Assignments] Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer PhosphoSite Plus Datasets Combined July 11, 2014 [Default Assignments] Effects of HER2 overexpression on cell signaling networks governing proliferation and migration UniProtKB KMN Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y1092	TFLPVPEyINQSVPK	None	Tinti All Peptides Test for Protocols Paper
S1096	VPEYINQsVPKRPAG	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
S1104	VPKRPAGsVQNPVYH	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phospho.ELM v9.0 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y1110	GSVQNPVyHNQPLNP	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 limST HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES LIMSt Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y1110	GSVQNPVyHNQPLNP	None	Tinti All Peptides Roman_set1
S1120	QPLNPAPsRDPHYQD	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
Y1125	APSRDPHyQDPHSTA	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Phosphosite, September 2009 March 24 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSite, May 2007 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
Y1125	APSRDPHyQDPHSTA	None	Tinti All Peptides
S1130	PHYQDPHsTAVGNPE	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
T1131	HYQDPHStAVGNPEY	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
Y1138	TAVGNPEyLNTVQPT	Phosphotyrosine	Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases PhosphoSite Plus Datasets Combined January 10, 2014 PhosphoSite Plus Datasets Combined July 11, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phosphosite, September 2009 March 24 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 UniProtKB - MOD_RES Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSite, May 2007 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications
Y1138	TAVGNPEyLNTVQPT	None	Tinti All Peptides Roman_set1
T1141	GNPEYLNtVQPTCVN	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
T1145	YLNTVQPtCVNSTFD	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
T1150	QPTCVNStFDSPAHW	Phosphothreonine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
S1153	CVNSTFDsPAHWAQK	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
S1162	AHWAQKGsHQISLDN	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 Phosphosite, September 2009 B Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 Phosphosite, September 2009 March 24
S1166	QKGSHQIsLDNPDYQ	Phosphoserine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications UniProtKB - MOD_RES [pY only] Proteogenomics connects somatic mutations to signalling in breast cancer [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES Phosphosite, September 2009 Phospho.ELM v9.0 [Miscleavages removed] [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES TCGA PNNL: Ovarian phosphoproteomic data Phosphosite Plus Datasets Combined July 3, 2013 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Phosphosite, September 2009 B [Only sites that respond to ischemia] Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Default Assignments Test] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks PhosphoSite Plus Datasets Combined July 11, 2014 UniProtKB KMN Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Phosphosite, September 2009 March 24
Y1172	ISLDNPDyQQDFFPK	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications Wolf-Yadlin UniProtKB - MOD_RES Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules [Default Assignments] Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases [pY only] Proteogenomics connects somatic mutations to signalling in breast cancer [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES Waziri GBM Samples Effects of HER2 overexpression on cell signaling networks governing proliferation and migration [Default Assignments] Time-resolved mass spectrometry of tyrosine phosphorylation sites in the epidermal growth factor receptor signaling network reveals dynamic modules Phosphosite, September 2009 Phospho.ELM v9.0 [Miscleavages removed] [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites TCGA PNNL: Ovarian phosphoproteomic data phosphotyrosine subset [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified GI lookup SUPP T1-27 PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES TCGA PNNL: Ovarian phosphoproteomic data Phosphosite Plus Datasets Combined July 3, 2013 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 UniprotKB MOD_RES Dec. 16, 2016 Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Default Assignments Test] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 [Default Assignments] Effects of HER2 overexpression on cell signaling networks governing proliferation and migration UniProtKB KMN Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y1172	ISLDNPDyQQDFFPK	None	Tinti All Peptides Test for Protocols Paper Roman_set1
K1179	YQQDFFPkEAKPNGI	N6-acetyllysine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 acK test PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K1182	DFFPKEAkPNGIFKG	N6-acetyllysine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 acK test PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K1188	AKPNGIFkGSTAENA	N6-acetyllysine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Phosphosite Plus Datasets Combined July 3, 2013 dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 acK test PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012
K1188	AKPNGIFkGSTAENA	Methylation	PhosphositePlus November 2016
S1190	PNGIFKGsTAENAEY	Phosphoserine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phospho.ELM v9.0 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 Phosphosite, September 2009 March 24
T1191	NGIFKGStAENAEYL	Phosphothreonine	PhosphoSite Plus Datasets Combined July 11, 2014 PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 PhosphoSitePlus Datasets Combined June 2016 Phosphosite Plus Datasets Combined July 3, 2013 Phosphosite, September 2009 Phosphosite, September 2009 B dbPTM 3.0 experimentally verified PTM sites PhosphoSite Plus Datasets, January 9, 2015 PhosphoSitePlus Datasets Combined June 15, 2015 Phosphosite Plus Datasets Combined December 3, 2012 Phosphosite, September 2009 March 24
Y1197	STAENAEyLRVAPQS	Phosphotyrosine	PhosphoSite Plus Datasets Combined January 10, 2014 PhosphositePlus November 2016 Flpin_EGFR_repB PhosphoSitePlus Datasets Combined June 2016 Proteogenomics connects somatic mutations to signalling in breast cancer UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES Flpin_EGFR_repC Phosphosite Plus Datasets Combined December 3, 2012 HPRD: Human Protein Reference Database Curated Modifications Wolf-Yadlin UniProtKB - MOD_RES [pY only] Proteogenomics connects somatic mutations to signalling in breast cancer Akt-RSK-S6 kinase signaling networks activated by oncogenic receptor tyrosine kinases [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES Waziri GBM Samples Effects of HER2 overexpression on cell signaling networks governing proliferation and migration Phosphosite, September 2009 Phospho.ELM v9.0 [Miscleavages removed] [Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks UniProtKB - MOD_RES UniProtKB - MOD_RES dbPTM 3.0 experimentally verified PTM sites [Cell lines specified] Global survey of phosphotyrosine signaling identifies oncogenic kinases in lung cancer, with cell lines specified PhosphoSitePlus Datasets Combined June 15, 2015 UniprotKB - MOD_RES Phosphosite Plus Datasets Combined July 3, 2013 Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels Phosphosite, September 2009 B test PhosphoSite Plus Datasets, January 9, 2015 PhosphoSite, May 2007 Guolin_H4006ER UniprotKB MOD_RES Dec. 16, 2016 Global Survey of Phosphotyrosine Signaling Identifies Oncogenic Kinases in Lung Cancer Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Miscleavages Removed][Default Assignments] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks [Default Assignments Test] Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks Flpin_EGFR PhosphoSite Plus Datasets Combined July 11, 2014 [Default Assignments] Effects of HER2 overexpression on cell signaling networks governing proliferation and migration UniProtKB KMN Signaling networks assembled by oncogenic EGFR and c-MET: Profiling of lung cancer cell lines Ultra-deep tyrosine phosphoproteomics enabled by a phosphotyrosine superbinder Flpin_EGFR Phosphosite, September 2009 March 24
Y1197	STAENAEyLRVAPQS	None	Tinti All Peptides Test for Protocols Paper
R1199	AENAEYLrVAPQSSE	Omega-N-methylated arginine	UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES UniProtKB - MOD_RES
R1199	AENAEYLrVAPQSSE	Omega-N-methylarginine	UniprotKB - MOD_RES UniProtKB - MOD_RES UniProtKB KMN dbPTM 3.0 experimentally verified PTM sites UniProtKB - MOD_RES UniProtKB - MOD_RES UniprotKB MOD_RES Dec. 16, 2016 UniProtKB - MOD_RES
A1210	QSSEFIGa	None	All human mutations dbSNP All mutations